su: ignoring --preserve-environment, it's mutually exclusive with --login
── Attaching core tidyverse packages ──────────────────────── tidyverse 2.0.0 ──
✔ dplyr 1.1.4 ✔ readr 2.1.5
✔ forcats 1.0.0 ✔ stringr 1.5.1
✔ ggplot2 3.5.1 ✔ tibble 3.2.1
✔ lubridate 1.9.3 ✔ tidyr 1.3.1
✔ purrr 1.0.2
── Conflicts ────────────────────────────────────────── tidyverse_conflicts() ──
✖ dplyr::filter() masks stats::filter()
✖ dplyr::lag() masks stats::lag()
ℹ Use the conflicted package () to force all conflicts to become errors
Attaching package: ‘DT’
The following objects are masked from ‘package:shiny’:
dataTableOutput, renderDataTable
Loading required package: sp
Please note that rgdal will be retired during October 2023,
plan transition to sf/stars/terra functions using GDAL and PROJ
at your earliest convenience.
See https://r-spatial.org/r/2023/05/15/evolution4.html and https://github.com/r-spatial/evolution
rgdal: version: 1.6-7, (SVN revision 1203)
Geospatial Data Abstraction Library extensions to R successfully loaded
Loaded GDAL runtime: GDAL 3.8.4, released 2024/02/08
Path to GDAL shared files: /usr/share/gdal
GDAL does not use iconv for recoding strings.
GDAL binary built with GEOS: TRUE
Loaded PROJ runtime: Rel. 9.4.0, March 1st, 2024, [PJ_VERSION: 940]
Path to PROJ shared files: /home/shiny/.local/share/proj:/usr/share/proj
PROJ CDN enabled: FALSE
Linking to sp version:2.1-4
To mute warnings of possible GDAL/OSR exportToProj4() degradation,
use options("rgdal_show_exportToProj4_warnings"="none") before loading sp or rgdal.
Registered S3 method overwritten by 'quantmod':
method from
as.zoo.data.frame zoo
Breaking News: tmap 3.x is retiring. Please test v4, e.g. with
remotes::install_github('r-tmap/tmap')
Loading required package: spData
To access larger datasets in this package, install the spDataLarge
package with: `install.packages('spDataLarge',
repos='https://nowosad.github.io/drat/', type='source')`
Loading required package: sf
Linking to GEOS 3.12.1, GDAL 3.8.4, PROJ 9.4.0; sf_use_s2() is FALSE
Loading required package: Matrix
Attaching package: ‘Matrix’
The following objects are masked from ‘package:tidyr’:
expand, pack, unpack
Attaching package: ‘spatialreg’
The following objects are masked from ‘package:spdep’:
get.ClusterOption, get.coresOption, get.mcOption,
get.VerboseOption, get.ZeroPolicyOption, set.ClusterOption,
set.coresOption, set.mcOption, set.VerboseOption,
set.ZeroPolicyOption
Attaching package: ‘reshape2’
The following object is masked from ‘package:tidyr’:
smiths
The `name` provided ('math') does not correspond to a known icon
The `name` provided ('math') does not correspond to a known icon
The `name` provided ('math') does not correspond to a known icon
The `name` provided ('math') does not correspond to a known icon
The `name` provided ('math') does not correspond to a known icon
The `name` provided ('math') does not correspond to a known icon
The `name` provided ('math') does not correspond to a known icon
The `name` provided ('math') does not correspond to a known icon
The `name` provided ('math') does not correspond to a known icon
The `name` provided ('math') does not correspond to a known icon
Listening on http://127.0.0.1:33379
Warning: Error in : error in evaluating the argument 'object' in selecting a method for function 'summary':
104:
103: stop
102: model_ols
100: renderPrint
99: func
83: renderFunc
82: output$model_ols_summary
1: runApp
Warning: Error in lm.morantest: w_matrix$listw is not a listw object
102: stop
101: lm.morantest
100: renderPrint
99: func
83: renderFunc
82: output$model_ols_error
1: runApp
Please update scripts to use lm.RStests in place of lm.LMtests
Warning: OGR support is provided by the sf and terra packages among others
Warning: OGR support is provided by the sf and terra packages among others
Warning: OGR support is provided by the sf and terra packages among others
Warning: OGR support is provided by the sf and terra packages among others
Warning in ogrInfo(dsn = dsn, layer = layer, encoding = encoding, use_iconv = use_iconv, :
ogrInfo: all features NULL
Warning: OGR support is provided by the sf and terra packages among others
Warning: OGR support is provided by the sf and terra packages among others
Warning: Error in readOGR: no features found
1: runApp
Warning: OGR support is provided by the sf and terra packages among others
Warning: OGR support is provided by the sf and terra packages among others
Warning: Error in ogrListLayers: Cannot open data source
1: runApp
Warning: Error in : error in evaluating the argument 'object' in selecting a method for function 'summary':
104:
103: stop
102: model_ols
100: renderPrint
99: func
83: renderFunc
82: output$model_ols_summary
1: runApp
Warning: Error in lm.morantest: w_matrix$listw is not a listw object
102: stop
101: lm.morantest
100: renderPrint
99: func
83: renderFunc
82: output$model_ols_error
1: runApp
Please update scripts to use lm.RStests in place of lm.LMtests
Warning: Error in : error in evaluating the argument 'object' in selecting a method for function 'summary':
104:
103: stop
102: model_ols
100: renderPrint
99: func
83: renderFunc
82: output$model_ols_summary
1: runApp
Warning: Error in lm.morantest: w_matrix$listw is not a listw object
102: stop
101: lm.morantest
100: renderPrint
99: func
83: renderFunc
82: output$model_ols_error
1: runApp
Please update scripts to use lm.RStests in place of lm.LMtests
Warning: OGR support is provided by the sf and terra packages among others
Warning: OGR support is provided by the sf and terra packages among others
Warning in readOGR(input$data_file$datapath) :
First layer Instructions for users read; multiple layers present in
/tmp/Rtmpx5KIqu/007c13c7dfc4589711e54752/0.xlsx, check layers with ogrListLayers()
Warning: OGR support is provided by the sf and terra packages among others
Warning: OGR support is provided by the sf and terra packages among others
Warning in ogrInfo(dsn = dsn, layer = layer, encoding = encoding, use_iconv = use_iconv, :
ogrInfo: all features NULL
Warning: OGR support is provided by the sf and terra packages among others
Warning: OGR support is provided by the sf and terra packages among others
Warning: Error in readOGR: no features found
1: runApp
Warning: OGR support is provided by the sf and terra packages among others
Warning: OGR support is provided by the sf and terra packages among others
Warning: OGR support is provided by the sf and terra packages among others
Warning: OGR support is provided by the sf and terra packages among others
Warning in ogrInfo(dsn = dsn, layer = layer, encoding = encoding, use_iconv = use_iconv, :
ogrInfo: all features NULL
Warning: OGR support is provided by the sf and terra packages among others
Warning: OGR support is provided by the sf and terra packages among others
Warning: Error in readOGR: no features found
1: runApp
Warning: Error in readOGR: no features found
106:
105: stop
104: geodata
97: renderUI
96: func
83: renderFunc
82: output$map_variable_UI
1: runApp
Warning: Error in readOGR: no features found
106:
105: stop
104: geodata
97: ::
htmlwidgets
shinyRenderWidget
96: func
83: renderFunc
82: output$map_leaflet
1: runApp
Warning: OGR support is provided by the sf and terra packages among others
Warning: OGR support is provided by the sf and terra packages among others
Warning: OGR support is provided by the sf and terra packages among others
Warning: OGR support is provided by the sf and terra packages among others
Warning in ogrInfo(dsn = dsn, layer = layer, encoding = encoding, use_iconv = use_iconv, :
ogrInfo: all features NULL
Warning: OGR support is provided by the sf and terra packages among others
Warning: OGR support is provided by the sf and terra packages among others
Warning: Error in readOGR: no features found
1: runApp
Execution halted